Index / other
BioHarbor
io-github-danielluo2-bioharbor declares 12 capabilities across 12 tools, with 2 critical issues.
35/100 exposureModerate
Manifest recorded 2026-10-15 from tools/list answered by the PyPI package bioharbor==0.1.6 (published to PyPI as bioharbor, listed in the official MCP registry as io.github.danielLuo2/bioharbor 0.1.6), run in an isolated container with no network access and no credentials. The date changes only when the manifest does. Not verified by a maintainer.
Issues
These describe what this server's manifest declares. A product can provide controls that MCP has no
way to express — token revocation, an admin console, audit logs — and this page cannot see them. The absence of a
declaration is not evidence that a control is absent.
critical · no-revocation · All 12 tools
12 of 12 tools declare no way for the customer to switch them off once granted. This applies to every tool because MCP has no field in which to declare a revocation mechanism; the product may provide one outside MCP that a manifest cannot show.
critical · irreversible-uncapped · 1 of 12 tools
1 tool is classified as irreversible and declares no limit.
high · no-expiry · All 12 tools
12 of 12 tools declare no expiry. This applies to every tool because MCP has no field in which to declare an expiry; the product may provide one outside MCP that a manifest cannot show.
high · no-audit-trail · All 12 tools
12 of 12 tools declare no record of their actions that the customer can read. This applies to every tool because MCP has no field in which to declare an audit requirement; the product may provide one outside MCP that a manifest cannot show.
high · uncapped-write · 1 of 12 tools
1 tool can modify data and declares no limit.
low · uncapped-read · 10 of 12 tools
10 tools can read data and declare no limit.
Declared capabilities
How each tool was read. declared means the server's own annotation said so — self-reported and
unverified. inferred is from the tool's name. assumed means nothing indicated either way.
| Tool | Read as | Basis |
|---|
seq_stats | read |
inferred |
translate_sequence | write |
assumed |
find_orfs | read |
inferred |
search_homologs | read |
inferred |
predict_structure | read |
inferred |
get_job | read |
inferred |
list_jobs | read |
inferred |
cancel_job | delete |
inferred |
describe_tool | read |
inferred |
list_databases | read |
inferred |
gpu_status | read |
inferred |
read_file | read |
inferred |
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